Xue X, Wu S, Wang Z, Zhu Y, He F. Protein probabilities in shotgun proteomics: Evaluating different estimation methods using a semi-random sampling model. Proteomics. 2006 Nov 28;6(23):6134-6145.

Liu W, Li D, Zhang J, Zhu Y, He F. SigFlux: A novel network feature to evaluate the importance of proteins in signal transduction networks. BMC Bioinformatics. 2006 Nov 27;7(1):515.

Zhang X, Guo Y, Song Y, Sun W, Yu C, Zhao X, Wang H, Jiang H, Li Y, Qian X, Jiang Y, He F. Proteomic analysis of individual variation in normal livers of human beings using difference gel electrophoresis. Proteomics. 2006 Oct;6(19):5260-8.

Song Y, Hao Y, Sun A, Li T, Li W, Guo L, Yan Y, Geng C, Chen N, Zhong F, Wei H, Jiang Y, He F. Sample preparation project for the subcellular proteome of mouse liver. Proteomics. 2006 Oct;6(19):5269-77.

Ying W, Jiang Y, Guo L, Hao Y, Zhang Y, Wu S, Zhong F, Wang J, Shi R, Li D, Wan P, Li X, Wei H, Li J, Wang Z, Xue X, Cai Y, Zhu Y, Qian X, He F. A dataset of human fetal liver proteome identified by subcellular fractionation and multiple protein separation and identification technology. Mol Cell Proteomics. 2006 Sep;5(9):1703-7.

Zhai Y, Zhou G, Deng G, Xie W, Dong X, Zhang X, Yu L, Yang H, Yuan X, Zhang H, Zhi L, Yao Z, Shen Y, Qiang B, He F. Estrogen receptor alpha polymorphisms associated with susceptibility to hepatocellular carcinoma in hepatitis B virus carriers. Gastroenterology. 2006 Jun;130(7):2001-9.

Wan J, Sun W, Li X, Ying W, Dai J, Kuai X, Wei H, Gao X, Zhu Y, Jiang Y, Qian X, He F. Inflammation inhibitors were remarkably up-regulated in plasma of severe acute respiratory syndrome patients at progressive phase. Proteomics. 2006 May;6(9):2886-94.

Zheng J, Gao X, Beretta L, He F. The Human Liver Proteome Project (HLPP) workshop during the 4th HUPO World Congress. Proteomics. 2006 Mar;6(6):1716-8.

Chen X, Wang H, Xie W, Liang R, Wei Z, Zhi L, Zhang X, Hao B, Zhong S, Zhou G, Zhang L, Gao X, Zhu Y, He F. Association of CYP1A2 genetic polymorphisms with hepatocellular carcinoma susceptibility: a case-control study in a high-risk region of China. Pharmacogenet Genomics. 2006 Mar;16(3):219-27.

He F. Proteomics in China. Proteomics. 2006 Jan;6(2):397-403.

Zhang L, Tie Y, Tian C, Xing G, Song Y, Zhu Y, Sun Z, He F. CKIP-1 recruits nuclear ATM partially to the plasma membrane through interaction with ATM. Cell Signal. 2006 Sep;18(9):1386-95.

Li D, Li J, Ouyang S, Wang J, Wu S, Wan P, Zhu Y, Xu X, He F. Protein interaction networks of Saccharomyces cerevisiae, Caenorhabditis elegans and Drosophila melanogaster: large-scale organization and robustness. Proteomics. 2006 Jan;6(2):456-61.

Wu S, Wan P, Li J, Li D, Zhu Y, He F. Multi-modality of pI distribution in whole proteome. Proteomics. 2006 Jan;6(2):449-55.

Wang H, Hao B, Chen X, Zhao N, Cheng G, Jiang Y, Liu Y, Lin C, Tan W, Lu D, Wei Q, Jin L, Lin D, He F. Beta-2 adrenergic receptor gene (ADRB2) polymorphism and risk for lungo adenocarcinoma: a case-control study in a Chinese population. Cancer Lett. 2006 Aug 28;240(2):297-305.

Wang H, Jiang Y, Liu Y, Lin C, Cheng G, Chen X, Hao B, Tan W, Lin D, He F. CYP2J2*7 single nucleotide polymorphism in a Chinese population. Clin Chim Acta. 2006 Mar;365(1-2):125-8.

Zuo C, Yu WJ, Zhou XF, Zhao DY, Yang PY Highly efficient enrichment and subsequent digestion of proteins in the mesoporous molecular sieve silicate SBA-15 for matrix-assisted laser desorption/ionization mass spectrometry with   time-of-flight/time-of-flight analyzer peptide mapping       RAPID COMMUNICATIONS IN MASS SPECTROMETRY  20 (20): 3139-3144 2006

Liu Y , Zhong W, Meng S, Kong JL, Lu HJ, Yang PY, Girault HH, Liu BHAssembly-controlled biocompatible interface on a microchip: Strategy to highly efficient proteolysis     CHEMISTRY-A EUROPEAN JOURNAL 12 (25): 6585-6591 AUG 25 2006

Jia WT, Chen XH, Lu HJ, Yang PYCaCO3-poly(methyl methacrylate) nanoparticles for fast enrichment of low-abundance peptides followed by CaCO3-core removal for MALDI-TOF MS analysis      ANGEWANDTE CHEMIE-INTERNATIONAL EDITION 45 (20): 3345-3349 2006

Huang Y, Shan W, Liu BH, Liu Y, Zhang YH, Zhao Y, Lu HJ, Tang Y, Yang PY  Zeolite nanoparticle modified microchip reactor for efficient protein digestion      LAB ON A CHIP 6 (4): 534-539 2006

Shen HL, Cheng G, Fan HZ, Zhang J, Zhang XM, Lu HJ, Liu CL, Sun FX, Jin H, Xu XJ, Xu GB, Wang S, Fang CY, Bao HM, Wang Y, Wang J, Zhong H, Yu ZI, Liu YK, Tang ZY, Yang PY. Expressed proteome analysis of human hepatocellular carcinoma in nude mice (LCI-D20) with high metastasis potential, PROTEOMICS 6 (2): 528-537 JAN 2006

Liu Y, Lu HJ, Zhong W, Song PY, Kong JL, Yang PY, Girault HH, Liu BHMulti layer-assembled microchip for enzyme immobilization as reactor toward low-level protein identification      ANALYTICAL CHEMISTRY 78 (3): 801-808 FEB 1 2006

Yi ZG, Fang CY, Pan TT, Wang JD,Yang PY, Yuan ZH. Subproteomic study of hepatitis C virus replicon reveals Ras-GTPase-activating protein binding protein 1 as potential HCV RC component. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2006;350 (1): 174-178.

Pan TT, Fang CY, Yi ZG, Yang PY, Yuan ZH. Subproteomic analysis of the cellular proteins associated with the 3' untranslated region of the hepatitis C virus genome in human liver cells. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2016 Sep 1;47(3):683-691.

Fang CY, Yi ZG, Liu F, Lan SY, Wang JD, Lu HJ,Yang PY, Yuan ZHProteome analysis of human liver carcinoma Huh7 cells harboring hepatitis C virus subgenomic replicon     PROTEOMICS 6 (2): 519-527 JAN 2006

Jiadong Wang, Wenyan Tong, Xiaonan Zhang, Li Chen, Zhigang Yi, Tingting Pan,Yunwen Hu, Li Xiang, Zhenghong Yuan. Hepatitis C virus non-structural protein NS5A interacts with FKBP38 and inhibits apoptosis in Huh7 hepatoma cells. FEBS Letters, 2006;580:4392-4400

Xiao-Nan Zhang, Jiang-Xia Liu, Yun-Wen Hu, Hui Chen, Zheng-Hong Yuan    Hyper-activated IRF-1 and STAT1 contribute to enhanced Interferon stimulated gene (ISG)  expression by Interferon α and γ co-treatment in human hepatoma cells    Biochimica et Biophysica Acta  1759 (2006) 417–425

Fang C, Yi Z, Liu F, Lan S, Wang J, Lu H, Yang P, Yuan Z. Proteome analysis of human liver carcinoma Huh7 cells harboring hepatitis C virus subgenomic replicon. Proteomics. 2006 Jan;6(2):519-27.

Xi Li, Hai-Yan Huang, Jie-Gen Chen, Lin Jiang, Hong-Lei Liu, De-Guo Liu, Tan-Jing Song, Qun He,  Chun-Gu Ma, Duan Ma , Tang Q.-Q . Lactacystin inhibits 3T3-L1 adipocyte differentiation through induction of CHOP-10 expression. Biochem Biophys Res Commun. 2006 ;350(1):1-6.

Jie-Gen Chen, Xi Li, Hai-Yan Huang, Hong-Lei Liu, De-Guo Liu, Tan-Jing Song, Chun-Gu Ma, Duan Ma, Hou-Yan Song and Tang Q.-Q Identification of a peroxisome proliferator  responsive element (PPRE)-like cis-element in mouse plasminogen activator inhibitor-1 gene promoter . Biochem Biophys Res Commun. 2006 Sep 1; 347(3):821-6.

Yang W, Ge J, Liu H, Zhao K, Liu X, Qu X, Li W, Huang Y, Sun A, Zou Y. Arsenic Trioxide Eluting Stent Reduces Neointima Formation in a Rabbit Iliac Artery In jury Mode.    Cardiovascu Res. 2006, 72:483-93.

Guomiao Shen, Zhen Xue, Xin Shen, Bin Sun, Xiaohong Gui, Mei Shen, JianMei, Qian Gao (2006) Recurrent Tuberculosis and Exogenous Reinfection, Shanghai, China.Emerging Infectious Diseases, 22(11): 1776-1778.

Haijian Wang, Bingtao Hao, Xiaoping Chen, Naiqing Zhao, Gang Cheng, Yan Jiang, Yang Liu, Chengzhao Lin, Wen Tan, Daru Lu, Qingyi Wei, Li Jin, Dongxin Lin, Fuchu He. Beta-2 adrenergic receptor gene (ADRB2) polymorphism and risk for lung adenocarcinoma: A case–control study in a Chinese population. Cancer Letters, Cancer Lett. 2006 Aug 28;240(2):297-305.

Lim H, Zhu YZ. Role of transforming growth factor-beta in the progression of heart failure. Cell Mol Life Sci. 2006 Nov;63(22):2584-96

Zhu R, Huang H, Zhang H, Wang Z, Hu X, Zhai W, Lin Y, Wang J, Zhu H. Prognostic analysis in chronic hepatitis B patients: a retrospective study of 216 cases about Scheuer scores, in situ expression of viral antigens and tissue hepatitis B virus DNA levels. Liver Int. 2006 Feb;26(1):82-9.

Fadare O, Liang SX, Ulukus EC, Chambers SK, Zheng W. Precursors of endometrial clear cell carcinoma. Am J Surg Pathol. 2006 Dec;30(12):1519-30.