Wang H, Ding K, Zhang Y, Jin L, Kullo IJ, He F. Comparative and Evolutionary Pharmacogenetics of ABCB1: Complex Signatures of Positive Selection on Coding and Regulatory Regions. Pharmacogenet Genomics, 2007; 17: 667-678.

Zhang J, Li J, Xie H, Zhu Y, He F. A new strategy to filter out false positive identifications of peptides in SEQUEST database search results. Proteomics. 2007 Oct 19;7(22):4036-4044

Sun W, Xing B, Sun Y, Du X, Lu M, Hao C, Lu Z, Mi W, Wu S, Wei H, Gao X, Zhu Y, Jiang Y, Qian X, He F. Proteome analysis of hepatocellular carcinoma by two-dimensional difference gel electrophoresis: novel protein markers in hepatocellular carcinoma tissues. Mol Cell Proteomics. 2007 Oct;6(10):1798-808.

Li L, Zhou Y, Sun L, Xing G, Tian C, Sun J, Zhang L, He F. NuSAP is degraded by APC/C-Cdh1 and its overexpression results in mitotic arrest dependent of its microtubules' affinity. Cell Signal. 2007 Oct;19(10):2046-55.

Zhou G, Zhai Y, Cui Y, Qiu W, Yang H, Zhang X, Dong X, He Y, Yao K, Zhang H, Peng Y, Yuan X, Zhi L, Zhang X, He F. Functional polymorphisms and haplotypes in the promoter of the MMP2 gene are associated with risk of nasopharyngeal carcinoma. Hum Mutat. 2007 Nov;28(11):1091-7.

Li L, Deng B, Xing G, Teng Y, Tian C, Cheng X, Yin X, Yang J, Gao X, Zhu Y, Sun Q, Zhang L, Yang X, He F. PACT is a negative regulator of p53 and essential for cell growth and embryonic development. Proc Natl Acad Sci U S A. 2007 May 8;104(19):7951-6. 

Zhang L, Tang Y, Tie Y, Tian C, Wang J, Dong Y, Sun Z, He F. The PH domain containing protein CKIP-1 binds to IFP35 and Nmi and is involved in cytokine signaling. Cell Signal. 2007 May;19(5):932-44.

Deguo Liu, Honglei Liu, Tanjing Song, Haiyan Huang, Xi Li, Qiqun Tang. Functional expression of the globular domain of human adiponectin in Pichia pastoris. Biochem Biophys Res Commun. 2007;363(3):769-775.

Xi Li, Jae-Woo Kim, Mads Gronborg, Henning Urlaub，M Daniel Lane, Qi-Qun Tang, (2007) Role od cdk2 in the Sequential Phosphorylation/activation of C/EBPb during adipocyte differentiation. Proc Natl Acad Sci USA. 104: 11597-602 

Xi Li, Hai-Yan Huang, Jie-Gen Chen, Lin Jiang, Hong-Lei Liu, De-Guo Liu, Tan-Jing Song, Qun He, Chun-Gu Ma, Duan Ma , Qi-Qun Tang. (2006) Lactacystin inhibits 3T3-L1 adipocyte differentiation through induction of CHOP-10 expression. Biochem Biophys Res Commun. 350(1):1-6

Jie-Gen Chen, Xi Li, Hai-Yan Huang, Hong-Lei Liu, De-Guo Liu, Tan-Jing Song, Chun-Gu Ma, Duan Ma,Hou-Yan Song and Qi-Qun Tang (2006) Identification of a peroxisome proliferator responsive element (PPRE)-like cis-element in mouse plasminogen activator inhibitor-1 gene promoter . Biochem Biophys Res Commun. 347(3):821-6.

Haiyan Huang, M.Daniel Lane, Qi-Qun Tang,. (2005) Effect of serum on  Down-regulation of CHOP-10 during Differentiation of 3T3-L1 Preadipocytes . Biochem Biophys Res Commun. 338 (2): 1185-1188.

Gu Xun, Su Zhixi Tissue-Driven Hypothesis of Genomic Evolution and Sequence-Expression Correlations. PNAS 2007. 104: 2779-2784.

Su Zhixi, Huang Yong, Gu Xun Tissue-driven hypothesis with Gene Ontology (GO) Analysis.Ann Biomed Eng. 2007. 35(6):1088-94.

Shi MH, Peng YY, Zhou J, Liu BH, Huang YP, Kong JL*. Multianalyte immunoassay based on insulating-controllable PoPD film at arrayed electrodes. integrated on a silicon chip Biosens. Bioelectron, 2007, 22:2841-2847.

Mu L, Liu Y, Cai S, Kong J. A smart surface in a microfluidic chip for controlled protein separation. Chemistry. 2007;13(18):5113-20.

Yun Liu, Yan Xue, Ji Ji, Xian Chen, Jilie Kong, Pengyuan Yang,Hubert H. Giraul, and Baohong Liu**. Gold Nanoparticle Assembly Microfluidic Reactor for Efficient On-line Proteolysis*. Molecular & Cellular Proteomics 6:1428–1436, 2007.

Gao MX, Deng CH, Fan ZQ, Yao N, Xu XQ, Yang PY, Zhang XM. A simple pathway to the synthesis of magnetic nanoparticles with immobilized metal ions for the fast removal of microcystins in water. Smal, 2007;(10): 1714-1717.

Xu XQ (Xu, Xiuqing), Deng CH (Deng, Chunhui), Yang PY (Yang, Pengyuan), Zhang XM (Zhang, Xiangmin). Immobilization of trypsin on superparamagnetic nanoparticles for rapid and effective proteolysis. Journal of Proteome Reseach6 (9): 3849-3855 SEP 2007

Zhao C (Zhao, Chao), Fang CY (Fang, Cai-Yun), Tian XC (Tian, Xiao-Chen), Wang L (Wang, Long), Yang PY (Yang, Peng-Yuan), Wen YM (Wen, Yu-Mei) Proteomic analysis of hepatitis B surface antigen positive transgenic mouse liver and decrease of cyclophilin A.Journal of Medical Virology 79 (10): 1478-1484 OCT 2007 

Li Y (Li, Yan), Yan B (Yan, Bo), Xu XQ (Xu, Xiuqing), Deng CH (Deng, Chunhui), Yang PY (Yang, Pengyuan), Shen XZ (Shen, Xizhong), Zhang XM (Zhang, Xiangmin). On-column tryptic mapping of proteins using metal-ion-chelated magnetic silica microspheres by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Rapid Communications in Mass Spectrometry21 (14): 2263-2268 2007  

Jia WT (Jia, Weitao), Wu HX (Wu, Huixia), Lui HJ (Lui, Haojie), Li N (Li, Na), Zhang Y (Zhang, Yang), Cai RF (Cai, Ruifang), Yang PY (Yang, Pengyuan) Rapid and automatic on-plate desalting protocol for MALD-MS: Using imprinted hydrophobic polymer template.Proteomics 7 (15): 2497-2506 AUG 2007 

Li Y (Li, Yan), Yan B (Yan, Bo), Deng CH (Deng, Chunhui), Yu WJ (Yu, Wenjia), Xu XQ (Xu, Xiuqing), Yang PY (Yang, Pengyuan), Zhang XM (Zhang, Xiangmin). Efficient on-chip proteolysis system based on functionalized magnetic silica microspheres. Proteomics 7 (14): 2330-2339 JUL 2007

Shan Z (Shan, Zhe), Han L (Han, Lu), Yuan MJ (Yuan, Minjia), Deng CH (Deng, Chunhui), Zhao DY (Zhao, Dongyuan), Tu B (Tu, Bo), Yang PY (Yang, Pengyuan) Mesoporous tungsten titanate as matrix for matrix-assisted laser desorption/ionization time-of-flight mass spectrometry analysis of biomolecules. Analytica Chimica Acta593 (1): 13-19 JUN 12 2007

Li Y (Li, Yan), Xu XQ (Xu, Xiuqing), Yan B (Yan, Bo), Deng CH (Deng, Chunhui), Yu WJ (Yu, Wenjia), Yang PY (Yang, Pengyuan), Zhang XM (Zhang, Xiangmin) Microchip reactor packed with metal-ion chelated magnetic silica microspheres for highly efficient proteolysis .Journa of Proteome Research6 (6): 2367-2375 2007 

Liu Y (Liu, Yun), Qu HY (Qu, Haiyun), Xue Y (Xue, Yan), Wu ZL (Wu, Zhonglin), Yang PY (Yang, Pengyuan), Liu BH (Liu, Baohong). Enhancement of proteolysis through the silica-gel-derived microfluidic reactor. Proteomics 7 (9): 1373-1378 MAY 2007

Zhou HJ (Zhou, Hai-Jun), Liu YK (Liu, Yin-Kun), Chui JF (Chui, Jie-Feng), Sun QL (Sun, Qiang-Ling), Lu WJ (Lu, Wen-Jing), Guo K (Guo, Kun), Jin H (Jin, Hong), Wei LM (Wei, Li-Ming), Yang PY (Yang, Peng-Yuan) .A glycoproteome database of normal human liver tissue. Journal of Cancer Research and Clinical Oncology 133 (6): 379-387 JUN 2007 

Xu YW (Xu Ya-Wei), Lu HJ (Lu Hao-Jie), Yang PY (Yang Peng-Yuan) Recent development of matrix assisted laser desorption ionization matrix applied in proteomics Chinese Journal of nanlytical Chemistry 35 (3): 455-460 MAR 2007 （Review ）

Liu F (Liu, Feng), Hu W (Hu, Wei), Cui SJ (Cui, Shu-Jian), Chi M (Chi, Ming), Fang CY (Fang, Cai-Yun), Wang ZQ (Wang, Zhi-Qin), Yang PY (Yang, Peng-Yuan), Han ZG (Han, Ze-Guang) Insight into the host-parasite interplay by proteomic study of host proteins copurified with the human parasite, Schistosoma japonicum Proteomics 7 (3): 450-462 FEB 2007

Zhang LJ, Lu HJ, Yang PY. Development of preconcentration for mass spectrometry in proteomics. Chin J Anal Chem , 2007, 35(1): 146-152.

Jia WT (Jia Wei-Tao), Lu HJ (Lu Hao-Jie), Yun D (Yun Dong), Yang PY (Yang Peng-Yuan) Sequence analysis of a complex polypeptide containing 28 amino acids by tandem mass spectrometry Acta Chimica Sinica65 (3): 177-183 FEB 14 2007

Chen X, Sun LW, Yu YB, Xue Y, Yang PY. Amino acid-coded tagging approaches in quantitative proteomics. Expert Review of Proteomics, 2007 Feb;4(1):25-37.

He YF, Liu YK, Lu HJ, Chen J, Yang PY. Comparative proteomic analysis of primary mouse liver c-Kit-(CD45/TER119)- stem/progenitor cells. J Cell Biochem. 2007 Nov 1;102(4):936-46.

Yun Liu, Yan Xue, Ji Ji, Xian Chen, Pengyuan Yang, Hubert H. Girault, Baohong Liu Gold Nanoparticle Assembly Microfluidic Reactor for Efficient On-line Proteolysis. Mol Cell Proteomics, August 1, 2007; 6(8): 1428-1436.

Xian Chen*, Liwei Sun, Yubao Yu, Yue Yan, Pengyuan Yang. Amino Acid-coded Tagging-based Approaches in Quantitative Proteomics. Expert Review of Proteomics, 2007;4:25-37.

He YF, Liu YK, Lu HJ, Yang PY.Comparative proteomic analysis of primary mouse liver c-Kit-(CD45/TER119)- stem/progenitor cells  J. Cell. Biochem. 2007 Nov 1;102(4):936-46. 

Shuhua Xu,Wei Huang,Haifeng Wang,Yungang He,Ying Wang,Yi Wang,Ji Qian,Momiao Xiong,and Li Jin.Dissecting Linkage Disequilibrium in frican-American Genomes: Roles of Markers and Individuals.Mol. Biol. Evol. 2007, 24: 2049–2058. 

Li H, Cai X, Winograd-Cort ER, Wen B, Cheng X, Qin Z, Liu W, Liu Y, Pan S, Qian J, Tan CC, Jin L. Mitochondrial DNA diversity and population differentiation in southern East Asia. Am J Phys Anthropol. 2007 Dec;134(4):481-8.

Jiu-Cun Wang, Cheng-Chang Su, Ji-Bin Xu, Le-Zhen Chen, Xiao-Hua Hu, Gui-Ying Wang, Yang Bao, Qiang Huang, Song-Bin Fu, Pu Li, Chen-Qi Lu, Rong-Mei Zhang, ZW Luo. Novel Microdeletion in the Transforming GrowthFactor b Type II Receptor Gene is Associated with Giant and Large Cell Variants of Nonsmall Cell Lung Carcinoma. Genes Chromosomes Cancer. 2007 Feb;46(2):192-201

Hu XH, Wang MH, Tan T, Li JR, Yang H, Leach L, Zhang RM*, Luo ZW*. (2007). Genetic dissection of ethanol tolerance in the budding yeast Saccharomyces cerevisiae. Genetics. 175(3): 1479-1487.

Luo ZW, Potokina E, Druka A, Wise R, Waugh R, Kearsey MJ. SFP genotyping from affymetrix arrays is robust but largely detects cis-acting expression regulators. Genetics. 2007 Jun;176(2):789-800.

Ji-Bin Xu, Yang Bao, Xiaohong Liu, Yanling Liu, Shengdong Huang, Jiu-Cun Wang. Defective expression of transforming growth factor beta type II receptor (TGFBR2) in the large cell variant of non-small cell lung carcinoma. Lung Cancer, 2007;58,36-43.

Feng Zhang, Chuncheng Lu, Zheng Li, Pingxing Xie, Yankai Xia, Xiaobin Zhu, Bin Wu, Xiaoyun Cai, Xiaofeng Wang, Ji Qian, Xinru Wang, Li Jin. Partial deletions are associated with an increased risk of complete deletion in AZFc: a new insight into the role of partial AZFcdeletions in male infertility. J Med Genet 2007;44:437-444.

Zhang XJ, Yan KL, Wang ZM, Yang S, Zhang GL, Fan X, Xiao FL, Gao M, Cui Y, Wang PG, Sun LD, Zhang KY, Wang B, Wang DZ, Xu SJ, Huang W, Liu JJ. Polymorphisms in interleukin-15 gene on chromosome 4q31.2 are associated with psoriasis vulgaris in Chinese population. J Invest Dermatol. 2007 Nov;127(11):2544-51.

Lei KF, Wang YF, Zhu XQ, Lu PC, Sun BS, Jia HL, Ren N, Ye QH, Sun HC, Wang L, Tang ZY, Qin LX. Identification of MSRA gene on chromosome 8p as a candidate metastasis suppressor for human hepatitis B virus-positive hepatocellular carcinoma. BMC Cancer. 2007 Sep 4;7:172.

Chang XZ, Li DQ, Hou YF, Wu J, Lu JS, Di GH, Jin W, Ou ZL, Shen ZZ, Shao ZM. Identification of the functional role of peroxiredoxin 6 in the progression of breast cancer. Breast Cancer Res. 2007, 2;9(6):R76

Jin W, Di G, Li J, Chen Y, Li W, Wu J, Cheng T, Yao M, Shao Z. TIEG1 induces apoptosis through mitochondrial apoptotic pathway and promotes apoptosis induced by homoharringtonine and velcade. FEBS Lett. 2007, 581(20):3826-32

Hu Z, Song CG, Lu JS, Luo JM, Shen ZZ, Huang W, Shao ZM.  A multigenic study on breast cancer risk associated with genetic polymorphisms of ER Alpha, COMT and CYP19 gene in BRCA1/BRCA2 negative Shanghai women with early onset breast cancer or affected relatives. J Cancer Res Clin Oncol. 2007, 133(12):969-78.

Jin W, Qu LF, Chen Q, Chang XZ, Wu J, Shao ZM. Gene expression pattern in apoptotic QGY-7703 cells induced by homoharringtonine. Acta Pharmacol Sin. 2007;28 (6):859-68.

Shanshan Lin, Min Wu, Yang Xu, Wei Xiong, Zhigang Yi, Xiaonan Zhang, Zhenghong Yuan*. Inhibition of Hepatitis B virus replication by MyD88 is mediated by nuclear factor-kappaB activation. Biochim Biophys Acta. 2007 Oct;1772(10):1150-7.

Min Wu, Yang Xu, Shanshan Lin, Xiaonan Zhang, Li Xiang, Zhenghong Yuan*. HBV polymerase inhibits the interferon-inducible MyD88 promoter by blocking nuclear translocation of Stat1. J Gen Virol. 2007 Dec;88(Pt 12):3260-9.

Zhiqiang Qin, Xiaomei Yang, Lei Yang, Juan Jiang, Yuanzhu Ou, Soeren Molin, Di Qu. Formation and properties of in vitro biofilms of ica negative Staphylococcus epidermidis clinical Isolates, Journal of Medical Microbiology (2007), 56, 83–93

Wang X, Zou Y, Sun A, Xu D, Niu Y, Wang S, Wang K, Ge J. Emodin induces growth arrest and death of human vascular smooth muscle cells through reactive oxygen species and p53. J Cardiovasc Pharmacol. 2007 May;49(5):253-60.

Qin Z, Lee B, Yang L, Zhang J, Yang X, Qu D, Jiang H, Molin S. Antimicrobial activities of YycG histidine kinase inhibitors against Staphylococcus epidermidis biofilms. FEMS Microbiol Lett. (2007), 273 (2): 149-156.

Qin Z, Ou Y, Yang L, Zhu Y, Tolker-Nielsen T, Molin S, Qu D. Role of autolysin-mediated DNA release in biofilm formation of Staphylococcus epidermidis. Microbiology, 2007;153(7):83-92.

Ying Zhang, Jianhua Fang, Yongbo Kuang, Xiaoxia Guo, Haojie Lu* and Pengyuan Yang, Wash-free In-situ Self-desalting and Peptide Enrichment by Block Copolymer Analyzed with MALDI-TOFMS, Chem. Commun., 2007, 4468-4470.

Zhu YZ, Wang ZJ, Ho P, Loke YY, Zhu YC, Huang SH, Tan CS, Whiteman M, Lu J, Moore PK. Hydrogen sulfide and its possible roles in myocardial ischemia in experimental rats. J Appl Physiol (1985). 2007 Jan;102(1):261-8.

Chen Y and Sun FY . Age-related decrease of neurogenesis and increase of apoptosis of newborn neurons in the striatum of rats after stroke. Brain Res. 2007 1166: 8-19.

Wang YQ, Guo X, Qiu MH, Feng XY, Sun FY. VEGF overexpression enhances striatal neurogenesis in brain of adult rat after a transient middle cerebral artery occlusion. J Neurosci Res. 2007, 85: 73-82

Zheng W, Liang SX, Yi X, Ulukus EC, Davis JR, Chambers SK. Occurrence of endometrial glandular dysplasia precedes uterine papillary serous carcinoma. Int J Gynecol Pathol. 2007 Jan;26(1):38-52.