1.Zhai SN, Zhang YY, Chen MH, Fu ZC, Chen LL, Ma XK* and Yang L*. CIRCpedia v3: an interactive database for circular RNA characterization and functional exploration. Nucleic Acids Res, 2025, 10.1093/nar/gkaf1039

2.Ma XK^#, Yu Y^#, Huang T^#*, Zhang D, Tian C, Tang W, Luo M, Du P*, Yu G* and Yang L*. Bioinformatics software development: Principles and future directions. The Innovation Life, 2024, 2(3): 100083 (Review)

3.Ma XK^#, Gao X^#, Cao M and Yang L*. Base-Editor-Mediated circRNA Knockout by Targeting Predominantly Back-Splice Sites. Methods Mol Biol, 2024, 2765: 193-208 (Book chapter)

4.Ma XK*, Zhai SN and Yang L*. Approaches and challenges in genome-wide circular RNA identification and quantification. Trends Genet, 2023, 39(12): 897-907 (Review)

5.Gao X^#, Ma XK^#, Li X, Li GW, Liu CX, Zhang J, Wang Y, Wei J, Chen J, Chen LL and Yang L*. Knockout of circRNAs by base editing back-splice sites of circularized exons. Genome Biol, 2022, 23(1): 16

6.Ma XK, Xue W, Chen LL and Yang L*. CIRCexplorer pipelines for circRNA annotation and quantification from non-polyadenylated RNA-seq datasets. Methods, 2021, 196: 3-10

7.Ma XK^#, Guo CJ^#, Yang L and Chen LL*. Altered processing of lncRNAs in stem cells contributes to non-conserved functions. Chemistry of Life, 2020, 238(07): 985-991 (Review)

8.Guo CJ^#, Ma XK^#, Xing YH, Zheng CC, Xu YF, Shan L, Zhang J, Wang SH, Wang YM, Carmichael GG, Yang L and Chen LL*. Distinct processing of lncRNAs contributes to non-conserved functions in stem cells. Cell, 2020, 181(3): 621-636.e22

9.Ma XK, Wang MR, Liu CX, Dong R, Carmichael GG, Chen LL and Yang L*. CIRCexplorer3: A CLEAR pipeline for direct comparison of circular and linear RNA expression. Genomics Proteomics Bioinformatics, 2019, 17(5): 511–521

10.Zhu YJ^#, Zheng B^#, Luo GJ^#, Ma XK^#, Lu XY, Lin XM, Yang S, Zhao Q, Wu T, Li ZX, Liu XL, Wu R, Liu JF, Ge Y, Yang L, Wang HY* and Chen L*. Circular RNAs negatively regulate cancer stem cells by physically binding FMRP against CCAR1 complex in hepatocellular carcinoma. Theranostics, 2019, 9(12): 3526-3540

11.Dong R^#, Ma XK^#, Li GW and Yang L*. CIRCpedia v2: An Updated Database for Comprehensive Circular RNA Annotation and Expression Comparison. Genomics Proteomics Bioinformatics, 2018, 16(4): 226-233

12.Dong R^#, Ma XK^#, Chen LL* and Yang L*. Increased complexity of circRNA expression during species evolution. RNA Biol, 2017, 14(8): 1064-1074