1.         Dong H., Zhou B., Kang H., Jin W., Zhu Y., Shen Y., Sun J., Wang S., Zhao P., Hou J., He Y^*. Small surface antigen variants of hepatitis B virus associated with chronic hepatitis B patients’ responses to telbivudine treatment. Antivir Ther. 2017;22(1):43-51.

2.         Xu H.^#, Yang Y.^#, Wang S., Zhu R., Qiu T., Qiu J., Zhang Q., Jin L., He Y^*., Tang K.^*, Cao Z.^* Predicting the Mutating Distribution at Antigenic Sites of the Influenza Virus. Sci Rep. 2016 Feb 3;6:20239. doi: 10.1038/srep20239.

3.         He Y.^*, Wang M., Huang X., Li R., Xu H., Xu S., Jin L.^* A probabilistic method for testing and estimating selection differences between populations. Genome Res. 2015 Dec;25(12):1903-9. doi: 10.1101/gr.192336.115. Epub 2015 Oct 13.

4.         Zhou B.^#, Dong H.^#, He Y.^#, Sun J.^#, Jin W.^#, Xie Q., Fan Rong., Wang M., Li Ran., Chen Y., Xie S., Shen Y., Huang X., Wang S., Lu F., Jia J., Zhuang H., Locarnini S., Zhao GP.^*, Jin L.^*, Hou J.^* Composition and Interactions of Hepatitis B virus quasispecies defined the virological response during telbivudine therapy. Sci Rep 2015 Nov 24;5:17123. doi: 10.1038/srep17123.

5.         Wang M., Huang X., Li R., Xu H., Jin L*., He Y*. Detecting Recent Positive Selection with High Accuracy and Reliability by Conditional Coalescent Tree. Mol Biol Evol. 2014 31(11):3068-3080.

6.         Jiang Y., Wang M., Zheng H., Wang WR., Jin L.^*, He Y.^* Resolving ambiguity in the phylogenetic relationship of genotypes A., B., and C of hepatitis B virus. BMC Evol Biol. 2013 Jun 11;13:120.

7.         He Y.^*, Wang WR., Xu S., Jin L.^* Snp Consortium PA. Paleolithic Contingent in Modern Japanese: Estimation and Inference using Genome-wide Data. Sci Rep. 2012 Apr;2:355

8.         He Y., Xu S., Jia C., Jin L^*. A design of multi-source samples as a shared control for association studies in genetically stratified populations. Cell Res. 2009  Jul;19(7):913-915

9.         He Y., Bergen AW., Hops H., Andrews JA., Tildesley E., Lessov-Schlaggar CN., Webster C., Benowitz N., Swan GE.^*  Genome-wide Linkage of Cotinine Pharmacokinetics Suggests Candidate Regions on Chromosomes 9 and 11. Am J Med Genet B Neuropsychiatr Genet. 2009 Jun 5;150B(4):554-559

10.    He Y*., Jiang R., Fu W., Bergen AW., Swan GE., Jin L. Correlation of Population Parameters Leading to Power Differences In Association Studies with Population Stratification. Ann Hum Genet. 2008 72:801-811

11.    Huang W.^#, He Y.^#, Wang H.^#, Wang Y.^#, Liu Y.^#, Wang Y., Chu X., Wang Y., Xu L., Shen Y., Xiong X., Li H., Wen B., Qian J., Yuan W., Zhang C., Wang Y., Jiang H., Zhao G., Chen Z^*., Jin L^*. Linkage disequilibrium sharing and haplotype-tagged SNP portability between populations. Proc. Natl. Acad. Sci. U S A. 2006., 103: 1418-1421