Wang XQ#, Tang ZX#, Yu D#, Cui SJ, Jiang YH, Zhang Q, Wang J, Yang PY*, Liu F*. Epithelial but not stromal expression of collagen alpha-1(III) is a diagnostic and prognostic indicator of colorectal carcinoma. Oncotarget. 2016;7(8):8823-8838.

Zhang Q#, Yan HB#, Wang J, Cui SJ, Wang XQ, Jiang YH, Feng L, Yang PY*, Liu F*. Chromatin remodeling gene AT-rich interactive domain-containing protein 1A suppresses gastric cancer cell proliferation by targeting PIK3CA and PDK1. Oncotarget. 2016;7(29):46127-46141.

Qiao J#, Cui SJ#, Xu LL, Chen SJ, Yao J, Jiang YH, Peng G, Fang CY, Yang PY*, Liu F*. Filamin C, a dysregulated protein in cancer revealed by label-free quantitative proteomic analyses of human gastric cancer cells. Oncotarget. 2015;6(2):1171-1189.

Zhang Q#, Wang XQ#, Wang J, Cui SJ, Lou XM, Yan B, Qiao J, Jiang YH, Zhang LJ, Yang PY, Liu F*. Upregulation of spondin-2 predicts poor survival of colorectal carcinoma patients. Oncotarget. 2015;6(17):15095-15110.

Qiao J#, Fang CY#, Chen SX, Wang XQ, Cui SJ, Liu XH, Jiang YH, Wang J, Zhang Y, Yang PY, Liu F*. Stroma derived COL6A3 is a potential prognosis marker of colorectal carcinoma revealed by quantitative proteomics. Oncotarget. 2015;6(30):29929-29946.

Qiao J#, Cui SJ#, Xu LL, Chen SJ, Yao J, Jiang YH, Peng G, Fang CY, Yang PY* and Liu F*. Filamin C, a dysregulated protein in cancer revealed by label-free quantitative proteomic analyses of human gastric cancer cells. Oncotarget. 2015, 6(2):1171-1189.

Yan HB#, Wang XF#, Zhang Q#, Tang ZQ, Jiang YH, Fan HZ, Sun YH*, Yang PY and Liu F*. Reduced expression of the chromatin remodeling gene ARID1A enhances gastric cancer cell migration and invasion via downregulation of E-cadherin transcription. Carcinogenesis. 2014, 35(4):867-876.

Chen SX#, Xu XE#, Wang XQ, Cui SJ, Xu LL, Jiang YH, Zhang Y, Yan HB, Zhang Q, Qiao J, Yang P-Y* and Liu F*. Identification of colonic fibroblast secretomes reveals secretory factors regulating colon cancer cell proliferation. J Proteomics. 2014, 110:155-171.

Chen SX, Xu XE, Wang XQ, Cui SJ, Xu LL, Jiang YH, Zhang Y, Yan HB, Zhang Q, Qiao J, Yang PY and Liu F*. Data from a proteomic analysis of colonic fibroblasts secretomes. Data in Brief. 2014, 1:19-24.

Cui SJ#, Xu LL#, Zhang T#, Xu M, Yao J, Fang CY, Feng Z, Yang PY*, Hu W* and Liu F*. Proteomic characterization of larval and adult developmental stages in Echinococcus granulosus reveals novel insight into host-parasite interactions. J Proteomics. 2013, 84:158-175.

Schistosoma japonicum Genome S and Functional Analysis C. The Schistosoma japonicum genome reveals features of host-parasite interplay. Nature. 2009, 460(7253):345-351.
Authorship:
Genome annotation and evolution analysis: Yan Zhou#, Huajun Zheng#, Xiangyi Chen, Lei Zhang, Kai Wang, Jing Guo, Zhen Huang, Bo Zhang, Wei Huang, Ke Jin, Dou Tonghai, Masami Hasegawa, Li Wang, Yuan Zhang, Jie Zhou, Lin Tao, Zhiwei Cao, Yixue Li, Tomas Vinar, Brona Brejova, Dan Brown, Ming Li, David J. Miller, David Blair, Yang Zhong (Principal Investigator), Zhu Chen (Principal Investigator)
Functional genomics analysis: Feng Liu#, Wei Hu#, Zhi-Qin Wang#, Qin-Hua Zhang, Huai-Dong Song, Saijuan Chen, Xuenian Xu, Bing Xu, Zhuan Ju, Yu Cheng, Paul J. Brindley, Donald P. McManus, Zheng Feng (Principal Investigator), Ze-Guang Han (Principal Investigator)
Sequencing and assembly: Gang Lu#, Shuangxi Ren#, Yuezhu Wang, Wenyi Gu, Hui Kang, Jie Chen, Xiaoyun Chen, Shuting Chen, Lijun Wang, Jie Yan, Biyun Wang, Xinyan Lv, Lei Jin, Bofei Wang, Shiyin Pu, Xianglin Zhang, Wei Zhang, Qiuping Hu, Genfeng Zhu, Jun Wang, Jun Yu, Jian Wang, Huanmin Yang, Zemin Ning, Matthew Beriman, Chia-Lin Wei, Yijun Ruan, Guoping Zhao (Principal Investigator), Shengyue Wang (Principal Investigator)
Paper writing: Feng Liu, Yan Zhou, Zhi-Qin Wang, Gang Lu, Huajun Zheng, Paul J. Brindley, Donald P. McManus, David Blair, Qinhua Zhang, Yang Zhong, Shengyue Wang, Ze-Guang Han, and Zhu Chen
Project leaders: Shengyue Wang*, Ze-Guang Han*, Zhu Chen*

Hu W#, Yan Q#, Shen DK#, Liu F#, Zhu ZD#, Song HD#, Xu XR#, Wang ZJ, Rong YP, Zeng LC, Wu J, Zhang X, Wang JJ, Xu XN, Wang SY, Fu G, Zhang XL, Wang ZQ, Brindley PJ, McManus DP, Xue CL, Feng Z#, Chen Z, Han ZG*. Evolutionary and biomedical implications of a Schistosoma japonicum complementary DNA resource. Nat Genet. 2003, 35(2):139-147.

Liu F#, Cui SJ#, Hu W#, Feng Z, Wang ZQ and Han ZG*. Excretory/secretory proteome of the adult developmental stage of human blood fluke, Schistosoma japonicum. Mol Cell Proteomics. 2009, 8(6):1236-1251.

Liu F*#, Chen P#, Cui SJ, Wang ZQ and Han ZG*. SjTPdb: integrated transcriptome and proteome database and analysis platform for Schistosoma japonicum. BMC Genomics. 2008, 9:304.

Liu F#, Hu W#, Cui SJ, Chi M, Fang CY, Wang ZQ, Yang PY and Han ZG*. Insight into the host-parasite interplay by proteomic study of host proteins copurified with the human parasite, Schistosoma japonicum. Proteomics. 2007, 7(3):450-462.

Liu F#, Lu J#, Hu W#, Wang SY, Cui SJ, Chi M, Yan Q, Wang XR, Song HD, Xu XN, Wang JJ, Zhang XL, Zhang X, Wang ZQ, Xue CL, Brindley PJ, McManus DP, Yang PY, Feng Z, Chen Z and Han ZG*. New perspectives on host-parasite interplay by comparative transcriptomic and proteomic analyses of Schistosoma japonicum. PLoS Pathog. 2006, 2(4):e29.

Liu F#, Lu J#, Fan HH#, Wang ZQ#, Cui SJ, Zhang GA, Chi M, Zhang X, Yang PY, Chen Z and Han ZG*. Insights into human CD34+ hematopoietic stem/progenitor cells through a systematically proteomic survey coupled with transcriptome. Proteomics. 2006, 6(9):2673-2692.

Yu J#, Liu F#, Cui SJ#, Liu Y, Song ZY, Cao H, Chen FE, Wang WJ, Sun T and Wang F*. Vitreous proteomic analysis of proliferative vitreoretinopathy. Proteomics. 2008, 8(17):3667-3678.

Liu F, Rong YP, Zeng LC, Zhang X and Han ZG*. Isolation and characterization of a novel human thioredoxin-like gene hTLP19 encoding a secretory protein. Gene. 2003, 315:71-78.